view mercurial/revlogutils/nodemap.py @ 44367:50ad851efd9b

nodemap: introduce append-only incremental update of the persistent data

Rewriting the full nodemap for each transaction has a cost we would like to
avoid. We introduce a new way to write persistent nodemap data by adding new
information at the end for file. Any new and updated block as added at the end
of the file. The last block is the new root node.

With this method, some of the block already on disk get "dereferenced" and
become dead data. In later changesets, We'll start tracking the amount of dead
data to eventually re-generate a full nodemap.

Differential Revision: https://phab.mercurial-scm.org/D7886

# nodemap.py - nodemap related code and utilities
#
# Copyright 2019 Pierre-Yves David <[e-mail]>
# Copyright 2019 George Racinet <[e-mail]>
#
# This software may be used and distributed according to the terms of the
# GNU General Public License version 2 or any later version.

from __future__ import absolute_import

import os
import re
import struct

from .. import (
    error,
    node as nodemod,
    util,
)


class NodeMap(dict):
    def __missing__(self, x):
        raise error.RevlogError(b'unknown node: %s' % x)


def persisted_data(revlog):
    """read the nodemap for a revlog from disk"""
    if revlog.nodemap_file is None:
        return None
    pdata = revlog.opener.tryread(revlog.nodemap_file)
    if not pdata:
        return None
    offset = 0
    (version,) = S_VERSION.unpack(pdata[offset : offset + S_VERSION.size])
    if version != ONDISK_VERSION:
        return None
    offset += S_VERSION.size
    (uid_size,) = S_HEADER.unpack(pdata[offset : offset + S_HEADER.size])
    offset += S_HEADER.size
    docket = NodeMapDocket(pdata[offset : offset + uid_size])

    filename = _rawdata_filepath(revlog, docket)
    return docket, revlog.opener.tryread(filename)


def setup_persistent_nodemap(tr, revlog):
    """Install whatever is needed transaction side to persist a nodemap on disk

    (only actually persist the nodemap if this is relevant for this revlog)
    """
    if revlog._inline:
        return  # inlined revlog are too small for this to be relevant
    if revlog.nodemap_file is None:
        return  # we do not use persistent_nodemap on this revlog
    callback_id = b"revlog-persistent-nodemap-%s" % revlog.nodemap_file
    if tr.hasfinalize(callback_id):
        return  # no need to register again
    tr.addfinalize(callback_id, lambda tr: _persist_nodemap(tr, revlog))


def _persist_nodemap(tr, revlog):
    """Write nodemap data on disk for a given revlog
    """
    if getattr(revlog, 'filteredrevs', ()):
        raise error.ProgrammingError(
            "cannot persist nodemap of a filtered changelog"
        )
    if revlog.nodemap_file is None:
        msg = "calling persist nodemap on a revlog without the feature enableb"
        raise error.ProgrammingError(msg)

    can_incremental = util.safehasattr(revlog.index, "nodemap_data_incremental")
    ondisk_docket = revlog._nodemap_docket

    # first attemp an incremental update of the data
    if can_incremental and ondisk_docket is not None:
        target_docket = revlog._nodemap_docket.copy()
        data = revlog.index.nodemap_data_incremental()
        datafile = _rawdata_filepath(revlog, target_docket)
        # EXP-TODO: if this is a cache, this should use a cache vfs, not a
        # store vfs
        with revlog.opener(datafile, b'a') as fd:
            fd.write(data)
    else:
        # otherwise fallback to a full new export
        target_docket = NodeMapDocket()
        datafile = _rawdata_filepath(revlog, target_docket)
        if util.safehasattr(revlog.index, "nodemap_data_all"):
            data = revlog.index.nodemap_data_all()
        else:
            data = persistent_data(revlog.index)
        # EXP-TODO: if this is a cache, this should use a cache vfs, not a
        # store vfs
        with revlog.opener(datafile, b'w') as fd:
            fd.write(data)
    # EXP-TODO: if this is a cache, this should use a cache vfs, not a
    # store vfs
    with revlog.opener(revlog.nodemap_file, b'w', atomictemp=True) as fp:
        fp.write(target_docket.serialize())
    revlog._nodemap_docket = target_docket
    # EXP-TODO: if the transaction abort, we should remove the new data and
    # reinstall the old one.

    # search for old index file in all cases, some older process might have
    # left one behind.
    olds = _other_rawdata_filepath(revlog, target_docket)
    if olds:
        realvfs = getattr(revlog, '_realopener', revlog.opener)

        def cleanup(tr):
            for oldfile in olds:
                realvfs.tryunlink(oldfile)

        callback_id = b"revlog-cleanup-nodemap-%s" % revlog.nodemap_file
        tr.addpostclose(callback_id, cleanup)


### Nodemap docket file
#
# The nodemap data are stored on disk using 2 files:
#
# * a raw data files containing a persistent nodemap
#   (see `Nodemap Trie` section)
#
# * a small "docket" file containing medatadata
#
# While the nodemap data can be multiple tens of megabytes, the "docket" is
# small, it is easy to update it automatically or to duplicated its content
# during a transaction.
#
# Multiple raw data can exist at the same time (The currently valid one and a
# new one beind used by an in progress transaction). To accomodate this, the
# filename hosting the raw data has a variable parts. The exact filename is
# specified inside the "docket" file.
#
# The docket file contains information to find, qualify and validate the raw
# data. Its content is currently very light, but it will expand as the on disk
# nodemap gains the necessary features to be used in production.

# version 0 is experimental, no BC garantee, do no use outside of tests.
ONDISK_VERSION = 0

S_VERSION = struct.Struct(">B")
S_HEADER = struct.Struct(">B")

ID_SIZE = 8


def _make_uid():
    """return a new unique identifier.

    The identifier is random and composed of ascii characters."""
    return nodemod.hex(os.urandom(ID_SIZE))


class NodeMapDocket(object):
    """metadata associated with persistent nodemap data

    The persistent data may come from disk or be on their way to disk.
    """

    def __init__(self, uid=None):
        if uid is None:
            uid = _make_uid()
        self.uid = uid

    def copy(self):
        return NodeMapDocket(uid=self.uid)

    def serialize(self):
        """return serialized bytes for a docket using the passed uid"""
        data = []
        data.append(S_VERSION.pack(ONDISK_VERSION))
        data.append(S_HEADER.pack(len(self.uid)))
        data.append(self.uid)
        return b''.join(data)


def _rawdata_filepath(revlog, docket):
    """The (vfs relative) nodemap's rawdata file for a given uid"""
    prefix = revlog.nodemap_file[:-2]
    return b"%s-%s.nd" % (prefix, docket.uid)


def _other_rawdata_filepath(revlog, docket):
    prefix = revlog.nodemap_file[:-2]
    pattern = re.compile(b"(^|/)%s-[0-9a-f]+\.nd$" % prefix)
    new_file_path = _rawdata_filepath(revlog, docket)
    new_file_name = revlog.opener.basename(new_file_path)
    dirpath = revlog.opener.dirname(new_file_path)
    others = []
    for f in revlog.opener.listdir(dirpath):
        if pattern.match(f) and f != new_file_name:
            others.append(f)
    return others


### Nodemap Trie
#
# This is a simple reference implementation to compute and persist a nodemap
# trie. This reference implementation is write only. The python version of this
# is not expected to be actually used, since it wont provide performance
# improvement over existing non-persistent C implementation.
#
# The nodemap is persisted as Trie using 4bits-address/16-entries block. each
# revision can be adressed using its node shortest prefix.
#
# The trie is stored as a sequence of block. Each block contains 16 entries
# (signed 64bit integer, big endian). Each entry can be one of the following:
#
#  * value >=  0 -> index of sub-block
#  * value == -1 -> no value
#  * value <  -1 -> a revision value: rev = -(value+10)
#
# The implementation focus on simplicity, not on performance. A Rust
# implementation should provide a efficient version of the same binary
# persistence. This reference python implementation is never meant to be
# extensively use in production.


def persistent_data(index):
    """return the persistent binary form for a nodemap for a given index
    """
    trie = _build_trie(index)
    return _persist_trie(trie)


def update_persistent_data(index, root, max_idx, last_rev):
    """return the incremental update for persistent nodemap from a given index
    """
    trie = _update_trie(index, root, last_rev)
    return _persist_trie(trie, existing_idx=max_idx)


S_BLOCK = struct.Struct(">" + ("l" * 16))

NO_ENTRY = -1
# rev 0 need to be -2 because 0 is used by block, -1 is a special value.
REV_OFFSET = 2


def _transform_rev(rev):
    """Return the number used to represent the rev in the tree.

    (or retrieve a rev number from such representation)

    Note that this is an involution, a function equal to its inverse (i.e.
    which gives the identity when applied to itself).
    """
    return -(rev + REV_OFFSET)


def _to_int(hex_digit):
    """turn an hexadecimal digit into a proper integer"""
    return int(hex_digit, 16)


class Block(dict):
    """represent a block of the Trie

    contains up to 16 entry indexed from 0 to 15"""

    def __init__(self):
        super(Block, self).__init__()
        # If this block exist on disk, here is its ID
        self.ondisk_id = None

    def __iter__(self):
        return iter(self.get(i) for i in range(16))


def _build_trie(index):
    """build a nodemap trie

    The nodemap stores revision number for each unique prefix.

    Each block is a dictionary with keys in `[0, 15]`. Values are either
    another block or a revision number.
    """
    root = Block()
    for rev in range(len(index)):
        hex = nodemod.hex(index[rev][7])
        _insert_into_block(index, 0, root, rev, hex)
    return root


def _update_trie(index, root, last_rev):
    """consume"""
    for rev in range(last_rev + 1, len(index)):
        hex = nodemod.hex(index[rev][7])
        _insert_into_block(index, 0, root, rev, hex)
    return root


def _insert_into_block(index, level, block, current_rev, current_hex):
    """insert a new revision in a block

    index: the index we are adding revision for
    level: the depth of the current block in the trie
    block: the block currently being considered
    current_rev: the revision number we are adding
    current_hex: the hexadecimal representation of the of that revision
    """
    if block.ondisk_id is not None:
        block.ondisk_id = None
    hex_digit = _to_int(current_hex[level : level + 1])
    entry = block.get(hex_digit)
    if entry is None:
        # no entry, simply store the revision number
        block[hex_digit] = current_rev
    elif isinstance(entry, dict):
        # need to recurse to an underlying block
        _insert_into_block(index, level + 1, entry, current_rev, current_hex)
    else:
        # collision with a previously unique prefix, inserting new
        # vertices to fit both entry.
        other_hex = nodemod.hex(index[entry][7])
        other_rev = entry
        new = Block()
        block[hex_digit] = new
        _insert_into_block(index, level + 1, new, other_rev, other_hex)
        _insert_into_block(index, level + 1, new, current_rev, current_hex)


def _persist_trie(root, existing_idx=None):
    """turn a nodemap trie into persistent binary data

    See `_build_trie` for nodemap trie structure"""
    block_map = {}
    if existing_idx is not None:
        base_idx = existing_idx + 1
    else:
        base_idx = 0
    chunks = []
    for tn in _walk_trie(root):
        if tn.ondisk_id is not None:
            block_map[id(tn)] = tn.ondisk_id
        else:
            block_map[id(tn)] = len(chunks) + base_idx
            chunks.append(_persist_block(tn, block_map))
    return b''.join(chunks)


def _walk_trie(block):
    """yield all the block in a trie

    Children blocks are always yield before their parent block.
    """
    for (_, item) in sorted(block.items()):
        if isinstance(item, dict):
            for sub_block in _walk_trie(item):
                yield sub_block
    yield block


def _persist_block(block_node, block_map):
    """produce persistent binary data for a single block

    Children block are assumed to be already persisted and present in
    block_map.
    """
    data = tuple(_to_value(v, block_map) for v in block_node)
    return S_BLOCK.pack(*data)


def _to_value(item, block_map):
    """persist any value as an integer"""
    if item is None:
        return NO_ENTRY
    elif isinstance(item, dict):
        return block_map[id(item)]
    else:
        return _transform_rev(item)


def parse_data(data):
    """parse parse nodemap data into a nodemap Trie"""
    if (len(data) % S_BLOCK.size) != 0:
        msg = "nodemap data size is not a multiple of block size (%d): %d"
        raise error.Abort(msg % (S_BLOCK.size, len(data)))
    if not data:
        return Block(), None
    block_map = {}
    new_blocks = []
    for i in range(0, len(data), S_BLOCK.size):
        block = Block()
        block.ondisk_id = len(block_map)
        block_map[block.ondisk_id] = block
        block_data = data[i : i + S_BLOCK.size]
        values = S_BLOCK.unpack(block_data)
        new_blocks.append((block, values))
    for b, values in new_blocks:
        for idx, v in enumerate(values):
            if v == NO_ENTRY:
                continue
            elif v >= 0:
                b[idx] = block_map[v]
            else:
                b[idx] = _transform_rev(v)
    return block, i // S_BLOCK.size


# debug utility


def check_data(ui, index, data):
    """verify that the provided nodemap data are valid for the given idex"""
    ret = 0
    ui.status((b"revision in index:   %d\n") % len(index))
    root, __ = parse_data(data)
    all_revs = set(_all_revisions(root))
    ui.status((b"revision in nodemap: %d\n") % len(all_revs))
    for r in range(len(index)):
        if r not in all_revs:
            msg = b"  revision missing from nodemap: %d\n" % r
            ui.write_err(msg)
            ret = 1
        else:
            all_revs.remove(r)
        nm_rev = _find_node(root, nodemod.hex(index[r][7]))
        if nm_rev is None:
            msg = b"  revision node does not match any entries: %d\n" % r
            ui.write_err(msg)
            ret = 1
        elif nm_rev != r:
            msg = (
                b"  revision node does not match the expected revision: "
                b"%d != %d\n" % (r, nm_rev)
            )
            ui.write_err(msg)
            ret = 1

    if all_revs:
        for r in sorted(all_revs):
            msg = b"  extra revision in  nodemap: %d\n" % r
            ui.write_err(msg)
        ret = 1
    return ret


def _all_revisions(root):
    """return all revisions stored in a Trie"""
    for block in _walk_trie(root):
        for v in block:
            if v is None or isinstance(v, Block):
                continue
            yield v


def _find_node(block, node):
    """find the revision associated with a given node"""
    entry = block.get(_to_int(node[0:1]))
    if isinstance(entry, dict):
        return _find_node(entry, node[1:])
    return entry