view tests/test-ancestor.py @ 40326:fed697fa1734

sqlitestore: file storage backend using SQLite

This commit provides an extension which uses SQLite to store file
data (as opposed to revlogs).

As the inline documentation describes, there are still several
aspects to the extension that are incomplete. But it's a start.
The extension does support basic clone, checkout, and commit
workflows, which makes it suitable for simple use cases.

One notable missing feature is support for "bundlerepos." This is
probably responsible for the most test failures when the extension
is activated as part of the test suite.

All revision data is stored in SQLite. Data is stored as zstd
compressed chunks (default if zstd is available), zlib compressed
chunks (default if zstd is not available), or raw chunks (if
configured or if a compressed delta is not smaller than the raw
delta). This makes things very similar to revlogs.

Unlike revlogs, the extension doesn't yet enforce a limit on delta
chain length. This is an obvious limitation and should be addressed.
This is somewhat mitigated by the use of zstd, which is much faster
than zlib to decompress.

There is a dedicated table for storing deltas. Deltas are stored
by the SHA-1 hash of their uncompressed content. The "fileindex" table
has columns that reference the delta for each revision and the base
delta that delta should be applied against. A recursive SQL query
is used to resolve the delta chain along with the delta data.

By storing deltas by hash, we are able to de-duplicate delta storage!
With revlogs, the same deltas in different revlogs would result in
duplicate storage of that delta. In this scheme, inserting the
duplicate delta is a no-op and delta chains simply reference the
existing delta.

When initially implementing this extension, I did not have
content-indexed deltas and deltas could be duplicated across files
(just like revlogs). When I implemented content-indexed deltas, the
size of the SQLite database for a full clone of mozilla-unified
dropped:

before: 2,554,261,504 bytes
after:  2,488,754,176 bytes

Surprisingly, this is still larger than the bytes size of revlog
files:

revlog files: 2,104,861,230 bytes
du -b:        2,254,381,614

I would have expected storage to be smaller since we're not limiting
delta chain length and since we're using zstd instead of zlib. I
suspect the SQLite indexes and per-column overhead account for the
bulk of the differences. (Keep in mind that revlog uses a 64-byte
packed struct for revision index data and deltas are stored without
padding. Aside from the 12 unused bytes in the 32 byte node field,
revlogs are pretty efficient.) Another source of overhead is file
name storage. With revlogs, file names are stored in the filesystem.
But with SQLite, we need to store file names in the database. This is
roughly equivalent to the size of the fncache file, which for the
mozilla-unified repository is ~34MB.

Since the SQLite database isn't append-only and since delta chains
can reference any delta, this opens some interesting possibilities.
For example, we could store deltas in reverse, such that fulltexts
are stored for newer revisions and deltas are applied to reconstruct
older revisions. This is likely a more optimal storage strategy for
version control, as new data tends to be more frequently accessed
than old data. We would obviously need wire protocol support for
transferring revision data from newest to oldest. And we would
probably need some kind of mechanism for "re-encoding" stores. But
it should be doable.

This extension is very much experimental quality. There are a handful
of features that don't work. It probably isn't suitable for day-to-day
use. But it could be used in limited cases (e.g. read-only checkouts
like in CI). And it is also a good proving ground for alternate
storage backends. As we continue to define interfaces for all things
storage, it will be useful to have a viable alternate storage backend
to see how things shake out in practice.

test-storage.py passes on Python 2 and introduces no new test failures on
Python 3. Having the storage-level unit tests has proved to be insanely
useful when developing this extension. Those tests caught numerous bugs
during development and I'm convinced this style of testing is the way
forward for ensuring alternate storage backends work as intended. Of
course, test coverage isn't close to what it needs to be. But it is
a start. And what coverage we have gives me confidence that basic store
functionality is implemented properly.

Differential Revision: https://phab.mercurial-scm.org/D4928

from __future__ import absolute_import, print_function

import binascii
import getopt
import math
import os
import random
import sys
import time

from mercurial.node import nullrev
from mercurial import (
    ancestor,
    debugcommands,
    hg,
    pycompat,
    ui as uimod,
    util,
)

if pycompat.ispy3:
    long = int
    xrange = range

def buildgraph(rng, nodes=100, rootprob=0.05, mergeprob=0.2, prevprob=0.7):
    '''nodes: total number of nodes in the graph
    rootprob: probability that a new node (not 0) will be a root
    mergeprob: probability that, excluding a root a node will be a merge
    prevprob: probability that p1 will be the previous node

    return value is a graph represented as an adjacency list.
    '''
    graph = [None] * nodes
    for i in xrange(nodes):
        if i == 0 or rng.random() < rootprob:
            graph[i] = [nullrev]
        elif i == 1:
            graph[i] = [0]
        elif rng.random() < mergeprob:
            if i == 2 or rng.random() < prevprob:
                # p1 is prev
                p1 = i - 1
            else:
                p1 = rng.randrange(i - 1)
            p2 = rng.choice(list(range(0, p1)) + list(range(p1 + 1, i)))
            graph[i] = [p1, p2]
        elif rng.random() < prevprob:
            graph[i] = [i - 1]
        else:
            graph[i] = [rng.randrange(i - 1)]

    return graph

def buildancestorsets(graph):
    ancs = [None] * len(graph)
    for i in xrange(len(graph)):
        ancs[i] = {i}
        if graph[i] == [nullrev]:
            continue
        for p in graph[i]:
            ancs[i].update(ancs[p])
    return ancs

class naiveincrementalmissingancestors(object):
    def __init__(self, ancs, bases):
        self.ancs = ancs
        self.bases = set(bases)
    def addbases(self, newbases):
        self.bases.update(newbases)
    def removeancestorsfrom(self, revs):
        for base in self.bases:
            if base != nullrev:
                revs.difference_update(self.ancs[base])
        revs.discard(nullrev)
    def missingancestors(self, revs):
        res = set()
        for rev in revs:
            if rev != nullrev:
                res.update(self.ancs[rev])
        for base in self.bases:
            if base != nullrev:
                res.difference_update(self.ancs[base])
        return sorted(res)

def test_missingancestors(seed, rng):
    # empirically observed to take around 1 second
    graphcount = 100
    testcount = 10
    inccount = 10
    nerrs = [0]
    # the default mu and sigma give us a nice distribution of mostly
    # single-digit counts (including 0) with some higher ones
    def lognormrandom(mu, sigma):
        return int(math.floor(rng.lognormvariate(mu, sigma)))

    def samplerevs(nodes, mu=1.1, sigma=0.8):
        count = min(lognormrandom(mu, sigma), len(nodes))
        return rng.sample(nodes, count)

    def err(seed, graph, bases, seq, output, expected):
        if nerrs[0] == 0:
            print('seed:', hex(seed)[:-1], file=sys.stderr)
        if gerrs[0] == 0:
            print('graph:', graph, file=sys.stderr)
        print('* bases:', bases, file=sys.stderr)
        print('* seq: ', seq, file=sys.stderr)
        print('*  output:  ', output, file=sys.stderr)
        print('*  expected:', expected, file=sys.stderr)
        nerrs[0] += 1
        gerrs[0] += 1

    for g in xrange(graphcount):
        graph = buildgraph(rng)
        ancs = buildancestorsets(graph)
        gerrs = [0]
        for _ in xrange(testcount):
            # start from nullrev to include it as a possibility
            graphnodes = range(nullrev, len(graph))
            bases = samplerevs(graphnodes)

            # fast algorithm
            inc = ancestor.incrementalmissingancestors(graph.__getitem__, bases)
            # reference slow algorithm
            naiveinc = naiveincrementalmissingancestors(ancs, bases)
            seq = []
            revs = []
            for _ in xrange(inccount):
                if rng.random() < 0.2:
                    newbases = samplerevs(graphnodes)
                    seq.append(('addbases', newbases))
                    inc.addbases(newbases)
                    naiveinc.addbases(newbases)
                if rng.random() < 0.4:
                    # larger set so that there are more revs to remove from
                    revs = samplerevs(graphnodes, mu=1.5)
                    seq.append(('removeancestorsfrom', revs))
                    hrevs = set(revs)
                    rrevs = set(revs)
                    inc.removeancestorsfrom(hrevs)
                    naiveinc.removeancestorsfrom(rrevs)
                    if hrevs != rrevs:
                        err(seed, graph, bases, seq, sorted(hrevs),
                            sorted(rrevs))
                else:
                    revs = samplerevs(graphnodes)
                    seq.append(('missingancestors', revs))
                    h = inc.missingancestors(revs)
                    r = naiveinc.missingancestors(revs)
                    if h != r:
                        err(seed, graph, bases, seq, h, r)

# graph is a dict of child->parent adjacency lists for this graph:
# o  13
# |
# | o  12
# | |
# | | o    11
# | | |\
# | | | | o  10
# | | | | |
# | o---+ |  9
# | | | | |
# o | | | |  8
#  / / / /
# | | o |  7
# | | | |
# o---+ |  6
#  / / /
# | | o  5
# | |/
# | o  4
# | |
# o |  3
# | |
# | o  2
# |/
# o  1
# |
# o  0

graph = {0: [-1, -1], 1: [0, -1], 2: [1, -1], 3: [1, -1], 4: [2, -1],
         5: [4, -1], 6: [4, -1], 7: [4, -1], 8: [-1, -1], 9: [6, 7],
         10: [5, -1], 11: [3, 7], 12: [9, -1], 13: [8, -1]}

def genlazyancestors(revs, stoprev=0, inclusive=False):
    print(("%% lazy ancestor set for %s, stoprev = %s, inclusive = %s" %
           (revs, stoprev, inclusive)))
    return ancestor.lazyancestors(graph.get, revs, stoprev=stoprev,
                                  inclusive=inclusive)

def printlazyancestors(s, l):
    print('membership: %r' % [n for n in l if n in s])
    print('iteration:  %r' % list(s))

def test_lazyancestors():
    # Empty revs
    s = genlazyancestors([])
    printlazyancestors(s, [3, 0, -1])

    # Standard example
    s = genlazyancestors([11, 13])
    printlazyancestors(s, [11, 13, 7, 9, 8, 3, 6, 4, 1, -1, 0])

    # Standard with ancestry in the initial set (1 is ancestor of 3)
    s = genlazyancestors([1, 3])
    printlazyancestors(s, [1, -1, 0])

    # Including revs
    s = genlazyancestors([11, 13], inclusive=True)
    printlazyancestors(s, [11, 13, 7, 9, 8, 3, 6, 4, 1, -1, 0])

    # Test with stoprev
    s = genlazyancestors([11, 13], stoprev=6)
    printlazyancestors(s, [11, 13, 7, 9, 8, 3, 6, 4, 1, -1, 0])
    s = genlazyancestors([11, 13], stoprev=6, inclusive=True)
    printlazyancestors(s, [11, 13, 7, 9, 8, 3, 6, 4, 1, -1, 0])

    # Test with stoprev >= min(initrevs)
    s = genlazyancestors([11, 13], stoprev=11, inclusive=True)
    printlazyancestors(s, [11, 13, 7, 9, 8, 3, 6, 4, 1, -1, 0])
    s = genlazyancestors([11, 13], stoprev=12, inclusive=True)
    printlazyancestors(s, [11, 13, 7, 9, 8, 3, 6, 4, 1, -1, 0])

    # Contiguous chains: 5->4, 2->1 (where 1 is in seen set), 1->0
    s = genlazyancestors([10, 1], inclusive=True)
    printlazyancestors(s, [2, 10, 4, 5, -1, 0, 1])

# The C gca algorithm requires a real repo. These are textual descriptions of
# DAGs that have been known to be problematic, and, optionally, known pairs
# of revisions and their expected ancestor list.
dagtests = [
    (b'+2*2*2/*3/2', {}),
    (b'+3*3/*2*2/*4*4/*4/2*4/2*2', {}),
    (b'+2*2*/2*4*/4*/3*2/4', {(6, 7): [3, 5]}),
]
def test_gca():
    u = uimod.ui.load()
    for i, (dag, tests) in enumerate(dagtests):
        repo = hg.repository(u, b'gca%d' % i, create=1)
        cl = repo.changelog
        if not util.safehasattr(cl.index, 'ancestors'):
            # C version not available
            return

        debugcommands.debugbuilddag(u, repo, dag)
        # Compare the results of the Python and C versions. This does not
        # include choosing a winner when more than one gca exists -- we make
        # sure both return exactly the same set of gcas.
        # Also compare against expected results, if available.
        for a in cl:
            for b in cl:
                cgcas = sorted(cl.index.ancestors(a, b))
                pygcas = sorted(ancestor.ancestors(cl.parentrevs, a, b))
                expected = None
                if (a, b) in tests:
                    expected = tests[(a, b)]
                if cgcas != pygcas or (expected and cgcas != expected):
                    print("test_gca: for dag %s, gcas for %d, %d:"
                          % (dag, a, b))
                    print("  C returned:      %s" % cgcas)
                    print("  Python returned: %s" % pygcas)
                    if expected:
                        print("  expected:        %s" % expected)

def main():
    seed = None
    opts, args = getopt.getopt(sys.argv[1:], 's:', ['seed='])
    for o, a in opts:
        if o in ('-s', '--seed'):
            seed = long(a, base=0) # accepts base 10 or 16 strings

    if seed is None:
        try:
            seed = long(binascii.hexlify(os.urandom(16)), 16)
        except AttributeError:
            seed = long(time.time() * 1000)

    rng = random.Random(seed)
    test_missingancestors(seed, rng)
    test_lazyancestors()
    test_gca()

if __name__ == '__main__':
    main()